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Organic Chemistry Portal: http://www.organic-chemistry.org/
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Synthesis Archive: http://www.synarchive.com/
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Name Reactions: http://www.name-reaction.com/
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Chem by Design: http://chemistrybydesign.oia.arizona.edu/
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pKa bond dissociation energy: http://ibond.chem.tsinghua.edu.cn/
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Top pharma posters: http://njardarson.lab.arizona.edu/content/top-pharmaceuticals-poster
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Bordwel pKa table: http://www.chem.wisc.edu/areas/reich/pkatable/
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White Organometalics notes: http://www.scs.illinois.edu/white/index.php?p=lectures
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Myers Synthesis notes: http://faculty.chemistry.harvard.edu/myers/pages/chem-215-handouts
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Nucleophilicities and Electrophilicities: http://www.cup.lmu.de/oc/mayr/DBintro.html
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Catalyst Selection Guide: http://jmcct.com/crg/web/#/crg
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Its not Voodoo lab tips: http://chem.chem.rochester.edu/~nvd/?page=home
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Evans lab questions:http://evans.rc.fas.harvard.edu/problems/index.cgi
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Green Reagents Guide: http://www.reagentguides.com/
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DOW Safety Academy: http://safety.dow.com/en/safety-courses
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Database of common organic reactions and reagents: http://www.commonorganicchemistry.com/